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Publications

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Authors with * are my (co-)supervised students in these projects.

2019
Deep Structured Learning in Medical Image Analysis. [PDF]
Bin Kong*.
PhD Thesis in UNC Charlotte, 2019.

2018
Interactive Mining for Large-scale Neuro-morphological Datasets. [PDF]
Zhongyu Li*.
PhD Thesis in UNC Charlotte, 2018.
Large-scale Retrieval for Medical Image Analytics: A Comprehensive Review. [PDF]
Zhongyu Li*, Xiaofan Zhang*, Henning Muller, Shaoting Zhang.
Medical Image Analysis (MedIA), 2018.

2017
StackGAN++: Realistic Image Synthesis with Stacked Generative Adversarial Networks. [arXiv] (v1, Oct. 2017) [Code]
Han Zhang, Tao Xu, Hongsheng Li, Shaoting Zhang, Xiaolei Huang, Xiaogang Wang, and Dimitris Metaxas.
arXiv:1710.10916, 2017.
Towards Large-Scale and Fine-Grained Image Recognition. [PDF]
Xiaofan Zhang*.
PhD Thesis in UNC Charlotte, 2017.
Toward Personalized Modeling: Incremental and Ensemble Alignment for Sequential Faces in the Wild.
Xi Peng, Shaoting Zhang, Yang Yu, Dimitris Metaxas.
International Journal of Computer Vision (IJCV), 2017.
Marker-Less 3D Motion Tracking Using Manifold Constrained Optimization.
Rahil Mehrizi, Xi Peng, Shaoting Zhang, Dimitris Metaxas, Kang Li.
Pattern Recognition (PR), 2017.
Indexing and mining large-scale neuron databases using maximum inner product search.
Zhongyu Li*, Ruogu Fang, Fumin Shen, Amin Katouzian, Shaoting Zhang.
Pattern Recognition (PR), Volume 63, Pages 680-688, 2017.
Interactive Exploration for Continuously Expanding Neuron Databases.
Zhongyu Li*, Dimitris N Metaxas, Aidong Lu, Shaoting Zhang.
Methods, Volume 115, Pages 100-109, 2017.
Scalable Mammogram Retrieval Using Composite Anchor Graph Hashing with Iterative Quantization.
Jingjing Liu*, Shaoting Zhang, Wei Liu, Cheng Deng, Yuanjie Zheng, Dimitris Metaxas.
IEEE Transactions on Circuits and Systems for Video Technology (TCSVT), Volumn 27, Issue 11, Pages 2450-2460, 2017.
(Corresponding Author)
StackGAN: Text to Photo-realistic Image Synthesis with Stacked Generative Adversarial Networks. [arXiv] (v1, Dec. 2016) [Bibtex] [Code]
Han Zhang, Tao Xu, Hongsheng Li, Shaoting Zhang, Xiaolei Huang, Xiaogang Wang, and Dimitris Metaxas.
International Conference on Computer Vision (ICCV), 2017. Oral presentation
Optimal Topological Cycles and Their Application in Cardiac Trabeculae Restoration.
Pengxiang Wu, Chao Chen, Yusu Wang, Shaoting Zhang, Changhe Yuan, Zhen Qian, Dimitris N. Metaxas, Leon Axel.
The 25th biennial international conference on Information Processing in Medical Imaging (IPMI) , 2017. Oral presentation
Cancer Metastasis Detection via Spatially Structured Deep Network.
Bin Kong*, Xin Wang, Zhongyu Li, Qi Song, Shaoting Zhang.
The 25th biennial international conference on Information Processing in Medical Imaging (IPMI) , 2017.

2016
Large-Scale Medical Image Analytics: Recent Methodologies, Applications and Future Directions. [PDF]
Shaoting Zhang, Dimitris Metaxas.
Medical Image Analysis (MedIA), 2016.
(20th Anniversary Special Issue of MedIA)
Scalable Histopathological Image Analysis via Supervised Hashing with Multiple Features. [PDF]
Menglin Jiang*, Shaoting Zhang, Junzhou Huang, Lin Yang, Dimitris Metaxas.
Medical Image Analysis (MedIA), 2016.
(Corresponding Author. The conference version won the MICCAI'15 Young Scientist Award)
Indexing and Mining Large-Scale Neuron Databases using Maximum Inner Product Search.
Zhongyu Li*, Ruogu Fang, Fumin Shen, Amin Katouzian, Shaoting Zhang.
Pattern Recognition, 2016.
(Corresponding Author)
Neuron-Miner: An Advanced Tool for Morphological Search and Retrieval in Neuroscientific Image Databases. [PDF]
Sailesh Conjeti, Sepideh Mesbah, Mohammadreza Negahdar, Philipp L. Rautenberg, Shaoting Zhang, Nassir Navab, Amin Katouzian.
Neuroinformatics, 2016.
Face Landmark Fitting via Optimized Part Mixtures and Cascaded Deformable Model. [PDF]
Xiang Yu, Junzhou Huang, Shaoting Zhang, Dimitris Metaxas.
IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI), 2016.
Multi-instance Deep Learning: Discover Discriminative Local Anatomies for Bodypart Recognition. [PDF]
Zhennan Yan, Yiqiang Zhan, Zhigang Peng, Shu Liao, Yoshihisa Shinagawa, Shaoting Zhang, Dimitris Metaxas, Xiang Zhou.
IEEE Transactions on Medical Imaging (TMI), Volume 35, Issue 5, Pages 1332-1343. 2016.
Fusing Heterogeneous Features from Stacked Sparse Autoencoder for Histopathological Image Analysis. [PDF]
Xiaofan Zhang*, Hang Dou, Tao Ju, Jun Xu, Shaoting Zhang.
IEEE Journal of Biomedical and Health Informatics (JBHI), 2016.
(Corresponding Author)
Multispectral Deep Neural Network for Pedestrian Detection. [PDF]
Jingjing Liu, Shaoting Zhang, Shu Wang, Dimitris Metaxas.
The 27th British Machine Vision Conference (BMVC), 2016.
Oral presentation
Mammographic Mass Segmentation with Online Learned Shape and Appearance Priors.
Menglin Jiang*, Shaoting Zhang, Yuanjie Zheng, Dimitris Metaxas.
The 19th Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2016.
Oral presentation ~4%
Recognizing End-diastole and End-systole Frames via Deep Temporal Regression Network.
Bin Kong*, Yiqiang Zhan, Min Shin, Tom Denney, Shaoting Zhang.
The 19th Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2016.
Multimodal Deep Learning for Cervical Dysplasia Diagnosis.
Tao Xu, Han Zhang, Xiaolei Huang, Shaoting Zhang, Dimitris Metaxas.
The 19th Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2016.
Visual Tracking with Reliable Memories. [PDF]
Shu Wang, Shaoting Zhang, Wei Liu, Dimitris Metaxas.
The 25th International Joint Conference on Artificial Intelligence (IJCAI), 2016.
Nonlinear Hierarchical Part-based Regression for Unconstrained Face Alignment. [PDF]
Xiang Yu, Zhe Lin, Shaoting Zhang, Dimitris Metaxas.
The 25th International Joint Conference on Artificial Intelligence (IJCAI), 2016.
Efficient k-Support-Norm Regularized Minimization via Fully Corrective Frank-Wolfe Method. [PDF]
Bo Liu, Xiaotong Yuan, Shaoting Zhang, Qingshan Liu, Dimitris Metaxas.
The 25th International Joint Conference on Artificial Intelligence (IJCAI), 2016.
Embedding Label Structures for Fine-grained Feature Representation. [PDF]
Xiaofan Zhang*, Feng Zhou, Yuanqing Lin, Shaoting Zhang.
The 29th IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2016.
SPDA-CNN: Unifying Semantic Part Detection and Abstraction for Fine-grained Recognition. [PDF]
Han Zhang, Tao Xu, Mohamed Elhoseiny, Xiaolei Huang, Shaoting Zhang, Ahmed Elgammal, Dimitris Metaxas.
The 29th IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2016.
Maximum Inner Product Search for Morphological Retrieval of Large-Scale Neuron Data. [PDF]
Zhongyu Li*, Fumin Shen, Ruogu Fang, Sailesh Conjeti, Amin Katouzian, Shaoting Zhang.
The IEEE International Symposium on Biomedical Imaging (ISBI), 2016. oral presentation

2015
High-Throughput Histopathological Image Analysis via Robust Cell Segmentation and Hashing. [PDF]
Xiaofan Zhang*, Fuyong Xing, Hai Su, Lin Yang, Shaoting Zhang.
Medical Image Analysis (MedIA), Volume 26, Issue 1, Pages 306-315, 2015.
(Corresponding Author)
A Homotopy-Based Sparse Representation for Fast and Accurate Shape Prior Modeling in Liver Surgical Planning. [PDF] [Code] [Bibtex]
Guotai Wang*, Shaoting Zhang, Hongzhi Xie, Dimitris Metaxas, Lixu Gu.
Medical Image Analysis (MedIA), Volume 19, Issue 1, Pages 176-186, 2015.
Query Specific Rank Fusion for Image Retrieval. [PDF] [Bibtex] [Patent] [Project] [Code]
Shaoting Zhang, Ming Yang, Timothee Cour, Kai Yu, Dimitris Metaxas.
IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI), Volume 37, Issue 4, Pages 803-815, 2015.
(Corresponding Author)
Robust Low-dose CT Perfusion Deconvolution via Tensor Total-Variation Regularization. [PDF] [Bibtex]
Ruogu, Fang, Shaoting Zhang, Tsuhan Chen, Pina C. Sanelli.
IEEE Transactions on Medical Imaging (TMI), Volume 34, Issue 7, Pages 1533-1548, 2015
Towards Large-Scale Histopathological Image Analysis: Hashing-Based Image Retrieval. [PDF] [Bibtex]
Xiaofan Zhang*, Wei Liu, Murat Dundar, Sunil Badve, Shaoting Zhang.
IEEE Transactions on Medical Imaging (TMI), Volume 34 Issue 2, Pages 496-506, 2015.
(Corresponding Author)
Computer-Aided Diagnosis of Mammographic Masses Using Scalable Image Retrieval. [PDF] [Bibtex]
Menglin Jiang*, Shaoting Zhang, Hongsheng Li, Dimitris Metaxas.
IEEE Transactions on Biomedical Engineering (TBME), Volume 62, Issue 2, Pages 783-792, 2015.
(Corresponding Author)
Is Interactional Dissynchrony a Clue to Deception? Insights from Automated Analysis of Nonverbal Visual Cues. [PDF] [Bibtex]
Xiang Yu*, Shaoting Zhang, Zhennan Yan, Fei Yang, Junzhou Huang, Norah Dunbar, M. Jensen, J.K. Burgoon, D.N. Metaxas.
IEEE Transactions on Cybernetics (TCYB), Volume 45, Issue 3, Pages 506-520, 2015.
(Corresponding Author)
Atlas-based Liver Segmentation and Hepatic Fat-fraction Assessment for Clinical Trials. [PDF] [Bibtex]
Zhennan Yan*, Shaoting Zhang, Chaowei Tan, Hongxing Qin, Boubakeur Belaroussi, Hui Jing Yu, Colin Miller, Dimitris Metaxas.
Computerized Medical Imaging and Graphics, Volume 41, Pages 80-92, 2015.
(Corresponding Author)
Learning Binary Codes for Maximum Inner Product Search. [PDF]
Fumin Shen, Wei Liu, Shaoting Zhang, Yang Yang, Heng Tao Shen.
International Conference on Computer Vision (ICCV), 2015.
PIEFA: Personalized Incremental and Ensemble Face Alignment. [PDF]
Xi Peng, Shaoting Zhang, Yang Yu, Dimitris Metaxas.
International Conference on Computer Vision (ICCV), 2015.
Joint Kernel-Based Supervised Hashing for Scalable Histopathological Image Analysis. [PDF]
Menglin Jiang*, Shaoting Zhang, Junzhou Huang, Lin Yang, Dimitris Metaxas.
The 18th Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2015.
MICCAI Young Scientist Award (4 out of 810 submissions)
Robust Cell Detection and Segmentation in Histopathological Images using Sparse Reconstruction and Stacked Denoising Autoencoders. [PDF]
Hai Su, Fuyong Xing, Xiangfei Kong, Yuanpu Xie, Shaoting Zhang, Lin Yang.
The 18th Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2015.
Finalist of MICCAI Young Scientist Award, Oral presentation 36/810 = ~4%
Fast Preconditioning for Accelerated Multi-Contrast MRI Reconstruction. [PDF]
Ruoyu Li, Yeqing Li, Ruogu Fang, Shaoting Zhang, Hao Pan, Junzhou Huang.
The 18th Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2015.
Oral presentation 36/810 = ~4%
Weighted Hashing with Multiple Cues for Cell-Level Analysis of Histopathological Images. [PDF]
Xiaofan Zhang*, Hai Su, Lin Yang, Shaoting Zhang.
The 24th biennial international conference on Information Processing in Medical Imaging (IPMI) , 2015. acceptance rate, ~30%
Fine-Grained Histopathological Image Analysis via Robust Segmentation and Large-Scale Retrieval. [PDF] [Ext. abstract] [Bibtex]
Xiaofan Zhang*, Hai Su, Lin Yang, Shaoting Zhang.
The 28th IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2015. acceptance rate, 602 / 2123 = 28.4%
Fusing Heterogeneous Features for the Image-Guided Diagnosis of Intraductal Breast Lesions. [PDF]
Xiaofan Zhang*, Hang Dou, Tao Ju, Shaoting Zhang.
The IEEE International Symposium on Biomedical Imaging (ISBI), 2015. oral presentation 130 / 714 = 18%
Finalist of Best Student Papers [Link]
Leveraging Coupled Multi-Index for Scalable Retrieval of Mammographic Masses. [PDF]
Menglin Jiang*, Shaoting Zhang, Ruogu Fang, Dimitris Metaxas.
The IEEE International Symposium on Biomedical Imaging (ISBI), 2015. oral presentation 130 / 714 = 18%

2014
Feature Matching with Affine-Function Transformation Models. [PDF] [Bibtex]
Hongsheng Li, Xiaolei Huang, Junzhou Huang, Shaoting Zhang.
IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI), Volume. 36, Issue. 12, Pages 2407-2422, 2014
Deformable Models with Sparsity Constraints for Cardiac Motion Analysis. [PDF] [Bibtex]
Yang Yu*, Shaoting Zhang, Kang Li, Dimitris Metaxas, Leon Axel.
Medical Image Analysis (MedIA), Volume 18, Issue 6, Pages 927-937, 2014.
(Corresponding Author)
Non-manual Grammatical Marker Recognition based on Multi-scale, Spatio-temporal Analysis of Head Pose and Facial Expressions. [PDF] [Bibtex]
Jingjing Liu, Bo Liu, Shaoting Zhang, Fei Yang, Peng Yang, Dimitris Metaxas and Carol Neidle.
Image and Vision Computing (IVC), Volume 32, Issue 10, Pages 671-681, 2014.
Best of Automatic Face and Gesture Recognition 2013 [Link]
(Corresponding Author)
Query Specific Fusion for Image Retrieval. [Link]
Co-inventor with Ming Yang and Kai Yu.
NEC Lab America, Inc, Patent Number: 8,762,390, approved in 6/24/2014.
Mining Histopathological Images via Composite Hashing and Online Learning. [PDF]
Xiaofan Zhang*, Lin Yang, Wei Liu, Hai Su, Shaoting Zhang.
The 17th Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2014.
Early acceptance rate, ~10%. Student travel award
Scalable Histopathological Image Analysis via Active Learning. [PDF]
Yan Zhu*, Shaoting Zhang, Wei Liu, Dimitris Metaxas.
The 17th Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2014.
Early acceptance rate, ~10%. Student travel award
Mining Histopathological Images via Hashing-Based Scalable Image Retrieval. [PDF]
Xiaofan Zhang*, Wei Liu, Shaoting Zhang.
The IEEE International Symposium on Biomedical Imaging (ISBI), 2014. oral presentation, ~120 / 600 = ~20%
Best Paper Travel Award (3 awardees out of ~600 submissions)
Computer-Aided Diagnosis of Mammographic Masses Using Vocabulary Tree-Based Image Retrieval. [PDF]
Menglin Jiang*, Shaoting Zhang, Jingjing Liu, Tian Shen, Dimitris Metaxas.
The IEEE International Symposium on Biomedical Imaging (ISBI), 2014. oral presentation, ~120 / 600 = ~20%
Robust Shape Prior Modeling based on Gaussian-Bernoulli Restricted Boltzmann Machine. [PDF]
Han Zhang*, Shaoting Zhang, Kang Li, Dimitris Metaxas.
The IEEE International Symposium on Biomedical Imaging (ISBI), 2014. oral presentation, ~120 / 600 = ~20%

2013
A Review of Motion Analysis Methods for Human Nonverbal Communication Computing. [PDF] [Bibtex]
Dimitris Metaxas, Shaoting Zhang.
Image and Vision Computing (IVC), Volume 31, Issues 6-7, Pages 421-433, 2013. (an invited review/position paper)
A New Segmentation Framework Based on Sparse Shape Composition in Liver Surgery Planning System. [PDF] [Bibtex]
Guotai Wang*, Shaoting Zhang, Feng Li, Lixu Gu.
Medical Physics, Volume 40, Issue 5, Page 051913, 2013.
Chosen as the front cover and featured article of Medical Physics, May 2013, oral presentation in EBMC'13 [Slides]
3D Anatomical Shape Atlas Construction using Mesh Quality Preserved Deformable Models. [PDF] [Bibtex]
Shaoting Zhang, Yiqiang Zhan, Xinyi Cui, Mingchen Gao, Junzhou Huang, Dimitris Metaxas.
Computer Vision and Image Understanding (CVIU), Volume 117, Issue 9, Pages 1061-1071, 2013.
Pose-free Facial Landmark Fitting via Optimized Part Mixtures and Cascaded Deformable Shape Model. [PDF] [Project] [Code] [Bibtex]
Xiang Yu, Junzhou Huang, Shaoting Zhang, Wang Yan, Dimitris Metaxas.
The 14th International Conference on Computer Vision (ICCV), 2013.
Acceptance rate: 413 / 1629 = 27.8%
Collaborative Multi Organ Segmentation by Integrating Deformable and Graphical Models. [PDF] [Bibtex]
Mustafa Uzunbas, Chao Chen, Shaoting Zhang, Kilian Pohl, Kang Li, Dimitris Metaxas.
The 16th Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2013.
Acceptance rate: 262 / 798 = 32%
Segmenting the Papillary Muscles and the Trabeculae from High Resolution Cardiac CT through Restoration of Topological Handles. [PDF] [Bibtex]
Mingchen Gao, Chao Chen, Shaoting Zhang, Zhen Qian, Dimitris Metaxas, Leon Axel.
The 23rd biennial International Conference on Information Processing in Medical Imaging (IPMI), 2013.
Acceptance rate: ~60 / 200 = ~30%
Sparse Deformable Models with Application to Cardiac Motion Analysis. [PDF] [Bibtex]
Yang Yu*, Shaoting Zhang, Junzhou Huang, Dimitris Metaxas, Leon Axel.
The 23rd biennial International Conference on Information Processing in Medical Imaging (IPMI), 2013.
Acceptance rate: ~60 / 200 = ~30%
Accurate segmentation of brain images into 34 structures combining a non-stationary adaptive statistical atlas and a multi-atlas with applications to Alzheimer's disease. [PDF] [Bibtex]
Zhennan Yan*, Shaoting Zhang, Xiaofeng Liu, Dimitris Metaxas, Albert Montillo.
The IEEE International Symposium on Biomedical Imaging (ISBI), 2013. oral presentation, 130 / 688 = 18.9%
Mouse LV 3D Motion and Strain Analysis using Tagged MRI. [PDF]
Yang Yu*, Shaoting Zhang, Zhennan Yan, Song Chen, Rong Zhou, Dimitris Metaxas.
The IEEE International Symposium on Biomedical Imaging (ISBI), 2013. oral presentation, 130 / 688 = 18.9%
Recognizing Eyebrow and Periodic Head Gestures Using CRFs for Non-Manual Grammatical Marker Detection in ASL. [PDF]
Jingjing Liu, Bo Liu, Shaoting Zhang, Fei Yang, Peng Yang, Dimitris Metaxas and Carol Neidle.
IEEE International Conference on Automatic Face and Gesture Recognition, 2013. oral presentation, 36 / 300 = 12%

2012
Automatic Image Annotation and Retrieval Using Group Sparsity. [Online] [Code, Matlab] [Bibtex]
Shaoting Zhang, Junzhou Huang, Hongsheng Li and Dimitris Metaxas.
IEEE Transactions on Systems, Man, and Cybernetics: Part B, Volume 42, Issue 3: Pages 838-849, 2012.
Deformable Segmentation via Sparse Representation and Dictionary Learning. [PDF] [Bibtex]
Shaoting Zhang, Yiqiang Zhan and Dimitris Metaxas.
Medical Image Analysis (MedIA), Volume 16, Issue 7, Pages 1385-1396, 2012.
A selection of the best work presented at MICCAI 2011 [Link]
Towards Robust and Effective Shape Modeling: Sparse Shape Composition. [PDF] [Project] [Code, Python] [Matlab] [Bibtex]
Shaoting Zhang, Yiqiang Zhan, Maneesh Dewan, Junzhou Huang, Dimitris Metaxas and Xiang Zhou.
Medical Image Analysis (MedIA), Volume 16, Issue 1, Pages 265-277, 2012.
The 3rd Most Cited Article in Medical Image Analysis since 2011 [Slides]
Background Subtraction using Group Sparsity and Low Rank Constraint. [PDF] [Bibtex]
Xinyi Cui, Junzhou Huang, Shaoting Zhang and Dimitris Metaxas.
The 12th European Conference on Computer Vision (ECCV), 2012. acceptance rate: 408 / 1437 = 28.4%
Query Specific Fusion for Image Retrieval. [PDF] [Poster] [Spotlight] [Project] [Bibtex]
Shaoting Zhang, Ming Yang, Timothee Cour, Kai Yu and Dimitris Metaxas.
The 12th European Conference on Computer Vision (ECCV), 2012. acceptance rate: 408 / 1437 = 28.4%
Shape Prior Modeling using Sparse Representation and Online Dictionary Learning. [PDF] [Spotlight] [Bibtex]
Shaoting Zhang, Yiqiang Zhan, Yan Zhou, Mustafa Uzunbas and Dimitris Metaxas.
The 15th Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2012.
Acceptance rate: 248 / 779 = 32%
Simplified Labeling Process for Medical Image Segmentation. [PDF] [Bibtex]
Mingchen Gao, Junzhou Huang, Xiaolei Huang, Shaoting Zhang, Dimitris Metaxas.
The 15th Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2012.
Acceptance rate: 248 / 779 = 32%

2011
Composite Splitting Algorithms for Convex Optimization. [PDF] [Project] [Code, Matlab] [Bibtex]
Junzhou Huang, Shaoting Zhang, Hongsheng Li and Dimitris Metaxas.
Computer Vision and Image Understanding, Volume 115, Issue 12, Pages 1610-1622, 2011.
Efficient MR Image Reconstruction for Compressed MR Imaging. [PDF] [Project] [Code, Matlab] [Bibtex]
Junzhou Huang, Shaoting Zhang and Dimitris Metaxas.
Medical Image Analysis (MedIA), Volume 15, Issue 5, Pages 670-679, 2011.
A selection of 10 highest ranked papers in MICCAI 2010 [Link]
Robust Mesh Editing Using Laplacian Coordinates. [PDF] [Code, C++] [Bibtex]
Shaoting Zhang, Junzhou Huang and Dimitris Metaxas.
Graphical Models, Volume 73, Issue 1, Pages 10-19, 2011.
Optimal Object Matching via Convexification and Composition. [PDF] [Video 1] [Video 2] [Video 3] [Video 4]
Hongsheng Li, Junzhou Huang, Shaoting Zhang, and Xiaolei Huang.
The 13th International Conference on Computer Vision (ICCV), 2011. acceptance rate: 295 / 1285 = 22.9%
A 3D Laplacian-Driven Parametric Deformable Model. [PDF]
Tian Shen, Xiaoleo Huang, Hongsheng Li, Edward Kim, Shaoting Zhang, and Junzhou Huang.
The 13th International Conference on Computer Vision (ICCV), 2011. acceptance rate: 295 / 1285 = 22.9%
Using High Resolution Cardiac CT Data to Model and Visualize Patient-Specific Interactions Between Trabeculae and Blood Flow. [PDF] [Bibtex]
Scott Kulp, Mingchen Gao, Shaoting Zhang, Zhen Qian, Szilard Voros, Leon Axel and Dimitris Metaxas.
The 14th Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2011.
Acceptance rate: ~30%
Automatic Alignment of Brain MR Scout Scans using Data-adaptive Multi-structural Model. [PDF]
Ting Chen, Yiqiang Zhan, Shaoting Zhang and Maneesh Dewan.
The 14th Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2011.
Acceptance rate: ~30%
Deformable Segmentation via Sparse Shape Representation. [PDF] [Project] [Code, Python] [Code, Matlab] [Bibtex]
Shaoting Zhang, Yiqiang Zhan, Maneesh Dewan, Junzhou Huang, Dimitris Metaxas and Xiang Zhou.
The 14th Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2011.
MICCAI Young Scientist Award Finalist, 14 out of 819
Sparse Shape Composition: A New Framework for Shape Prior Modeling. [PDF] [Bibtex]
Shaoting Zhang, Yiqiang Zhan, Maneesh Dewan, Junzhou Huang, Dimitris Metaxas and Xiang Zhou.
The 24th IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2011. acceptance rate: 438 / 1677 = 26%
3D Segmentation of Rodent Brain Structures Using Active Volume Model With Shape Priors. [PDF]
Shaoting Zhang, Junzhou Huang, Mustafa Uzunbas, Tian Shen, Foteini Delis, Xiaolei Huang, Nora Volkow, P. Thanos, Dimitris Metaxas.
The IEEE International Symposium on Biomedical Imaging (ISBI), 2011. oral presentation, 135 / 736 = 18%, [Slides])
4D Cardiac Reconstruction Using High Resolution CT Images. [PDF] [Video] [Bibtex]
Mingchen Gao, Junzhou Huang, Shaoting Zhang, Zhen Qian, Szilard Voros, Dimitri Metaxas and Leon Axel.
The International Conference on Functional Imaging and Modeling of the Heart, 2011.
Best Paper Award

2010 and before
Efficient MR Image Reconstruction for Compressed MR Imaging. [PDF] [Slides] [Project] [Code, Matlab] [Bibtex]
Junzhou Huang, Shaoting Zhang and Dimitris Metaxas.
The 13th Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2010.
MICCAI Young Scientist Award, 5 out of 786, oral presentation
Fast Optimization for Mixture Prior Models. [PDF] [Code, Matlab] [Bibtex]
Junzhou Huang, Shaoting Zhang and Dimitris Metaxas.
The 11th European Conference on Computer Vision (ECCV), 2010. acceptance rate: 327 / 1174 = 27.9%
Image Retrieval via Probabilistic Hypergraph Ranking. [PDF] [Bibtex]
Yuchi Huang, Qingshan Liu, Shaoting Zhang and Dimitris Metaxas.
The 23rd IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2010. acceptance rate: 383 / 1717 = 22.3%
Automatic Image Annotation Using Group Sparsity. [PDF] [Slides] [Code, Matlab] [Bibtex]
Shaoting Zhang, Junzhou Huang, Yuchi Huang, Yang Yu, Hongsheng Li and Dimitris Metaxas.
The 23rd IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2010.
Oral presentation, acceptance rate: 78 / 1717 = 4.5%
Skeleton Based As-Rigid-As-Possible Volume Modeling. [PDF] [Slides] [Code, C++]
Shaoting Zhang, Andrew Nealen and Dimitris Metaxas.
The 31st annual conference of the European Association for Computer Graphics (EG), 2010. (short paper, oral presentation)
Hybrid Mesh Editing. [PDF]
Peter Borosan, Reid Howard, Shaoting Zhang and Andrew Nealen.
The 31st annual conference of the European Association for Computer Graphics (EG), 2010. (short paper, oral presentation)
LV Surface Reconstruction from Sparse tMRI using Laplacian Surface Deformation and Optimization. [PDF] [Code, C++] [Bibtex]
Shaoting Zhang, Xiaoxu Wang, Dimitris Metaxas, Ting Chen and Leon Axel.
The IEEE International Symposium on Biomedical Imaging (ISBI), 2009.
LV Motion and Strain Computation from tMRI Based on Meshless Deformable Models. [PDF] [Video] [Bibtex]
Xiaoxu Wang, Ting Chen, Shaoting Zhang, Dimitris Metaxas, and Leon Axel.
The 11th Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2008.